Sopen08g012000

Description : KNOX2 domain

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g012000

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16694	No alias	homeotic protein knotted-1	0.04	Orthogroups_2024-Update
At1g62990	No alias	Homeobox protein knotted-1-like 7...	0.02	Orthogroups_2024-Update
Bradi2g38390	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Brara.B03654.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F02723.1	No alias	KNOX-type transcription factor	0.01	Orthogroups_2024-Update
Brara.K00379.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G017087	No alias	KNOTTED-like from Arabidopsis thaliana	0.01	Orthogroups_2024-Update
Glyma.02G269900	No alias	KNOX/ELK homeobox transcription factor	0.04	Orthogroups_2024-Update
Glyma.11G027100	No alias	KNOTTED-like homeobox of Arabidopsis thaliana 7	0.03	Orthogroups_2024-Update
Glyma.13G157300	No alias	KNOTTED1-like homeobox gene 3	0.02	Orthogroups_2024-Update
Glyma.17G215500	No alias	KNOTTED1-like homeobox gene 3	0.05	Orthogroups_2024-Update
HORVU4Hr1G003410.3	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
HORVU7Hr1G114650.5	No alias	KNOX-type transcription factor	0.01	Orthogroups_2024-Update
LOC_Os08g19650	No alias	homeobox protein knotted-1, putative, expressed	0.01	Orthogroups_2024-Update
MA_10428446g0010	No alias	(at4g08150 : 291.0) A member of class I knotted1-like...	0.03	Orthogroups_2024-Update
MA_10428500g0010	No alias	(o04136\|knap3_maldo : 399.0) Homeobox protein...	0.01	Orthogroups_2024-Update
Potri.004G004700	No alias	KNOX/ELK homeobox transcription factor	0.01	Orthogroups_2024-Update
Potri.013G008600	No alias	KNOTTED1-like homeobox gene 6	0.02	Orthogroups_2024-Update
Potri.018G114100	No alias	KNOTTED1-like homeobox gene 3	0.01	Orthogroups_2024-Update
Seita.9G560500.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	89	130
IPR008422	Homeobox_KN_domain	292	331
IPR005539	ELK_dom	252	273
IPR005541	KNOX2	145	194

External Links

No external refs found!

Sopen08g012000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation