Sopen08g012480

Description : DEAD/DEAH box helicase

Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g012480
Cluster	HCCA clusters: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g03180	No alias	DEAD box RNA helicase (RH3)	0.06	Orthogroups_2024-Update
Bradi4g35490	No alias	DEAD box RNA helicase (PRH75)	0.02	Orthogroups_2024-Update
Cre03.g200095	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Glyma.03G226600	No alias	DEAD box RNA helicase (RH3)	0.04	Orthogroups_2024-Update
Glyma.10G140900	No alias	DEAD box RNA helicase (RH3)	0.03	Orthogroups_2024-Update
Glyma.10G241900	No alias	DEAD box RNA helicase (PRH75)	0.04	Orthogroups_2024-Update
Pp1s7_15V6	No alias	dead deah box helicase family expressed	0.02	Orthogroups_2024-Update
Pp1s7_56V6	No alias	dead box atp-dependent rna	0.03	Orthogroups_2024-Update
Seita.9G027200.1	No alias	group-II intron splicing RNA helicase *(RH3)	0.02	Orthogroups_2024-Update
Sobic.001G028100.1	No alias	group-II intron splicing RNA helicase *(RH3)	0.05	Orthogroups_2024-Update
Solyc08g042050	No alias	RNA helicase DEAD25	0.11	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	726	742
IPR012562	GUCT	534	634
IPR001650	Helicase_C	340	447
IPR011545	DEAD/DEAH_box_helicase_dom	129	302

External Links

No external refs found!

Sopen08g012480

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation