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  5. Sopen08g012630

Sopen08g012630


Description : Helitron helicase-like domain at N-terminus


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g012630
Cluster HCCA clusters: Cluster_364

Target Alias Description ECC score Gene Family Method Actions
Brara.K01119.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.01G135100 No alias PIF1 helicase 0.02 Orthogroups_2024-Update
Glyma.07G160600 No alias PIF1 helicase 0.03 Orthogroups_2024-Update
Glyma.09G080200 No alias PIF1 helicase 0.02 Orthogroups_2024-Update
Glyma.12G111300 No alias PIF1 helicase 0.02 Orthogroups_2024-Update
Solyc11g044590 No alias ubiquitin-specific protease 8 (AHRD V3.3 --* AT5G22030.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025476 Helitron_helicase-like 113 296
IPR002048 EF_hand_dom 390 415
IPR002048 EF_hand_dom 454 478
IPR003871 DUF223 561 622
No external refs found!