1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen08g013300

Sopen08g013300


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g013300
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
Kfl01067_g1 kfl01067_g1_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os09g28260 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g20040 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
PSME_00024374-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g019380 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g019400 No alias No description available 0.03 Orthogroups_2024-Update
Sopen02g001860 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen06g011960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g016630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g028470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g019830 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen12g010440 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen12g010870 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 408 424
IPR005162 Retrotrans_gag_dom 204 300
IPR000477 RT_dom 741 900
No external refs found!