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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YLQ2_CYNCS)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc02g081900 | |
| Cluster | HCCA clusters: Cluster_267 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_25971 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_38131 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| At4g14170 | No alias | Pentatricopeptide repeat-containing protein At4g14170... | 0.03 | Orthogroups_2024-Update | |
| At5g39680 | No alias | Pentatricopeptide repeat-containing protein At5g39680... | 0.03 | Orthogroups_2024-Update | |
| Brara.F01301.1 | No alias | RNA editing factor *(OTP970) | 0.03 | Orthogroups_2024-Update | |
| Brara.G01460.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G029859 | No alias | dynamin-like protein 6 | 0.03 | Orthogroups_2024-Update | |
| Glyma.03G264700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.13G001700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.14G194400 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.16G035600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU6Hr1G091320.4 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G038460.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G084980.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g08680 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g15570 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os07g20420 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_385322g0010 | No alias | (at1g08070 : 385.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| MA_99849g0010 | No alias | (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00014882-RA | No alias | (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00026226-RA | No alias | (at3g46790 : 588.0) Encodes a member of a PCMP (plant... | 0.02 | Orthogroups_2024-Update | |
| PSME_00030185-RA | No alias | (at3g57430 : 680.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00042901-RA | No alias | (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00051747-RA | No alias | (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| Seita.3G126600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.9G162400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.009G079400.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
| Solyc12g096510 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen02g026530 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g024580 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 367 | 412 |
| IPR002885 | Pentatricopeptide_repeat | 579 | 628 |
| IPR002885 | Pentatricopeptide_repeat | 263 | 309 |
| IPR002885 | Pentatricopeptide_repeat | 656 | 682 |
| IPR002885 | Pentatricopeptide_repeat | 162 | 191 |
| IPR002885 | Pentatricopeptide_repeat | 441 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 469 | 495 |
| IPR002885 | Pentatricopeptide_repeat | 237 | 258 |
| IPR032867 | DYW_dom | 755 | 879 |
| No external refs found! |