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  5. Sopen08g014170

Sopen08g014170


Description : PPR repeat family


Gene families : OG_42_0007898 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g014170
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G018000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G018300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os07g36390 No alias PPR repeat containing protein, expressed 0.03 Orthogroups_2024-Update
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.02 Orthogroups_2024-Update
Seita.2G345300.1 No alias mRNA stability factor *(CRP1) 0.02 Orthogroups_2024-Update
Solyc08g045850 No alias pentatricopeptide repeat-containing protein 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 219
IPR002885 Pentatricopeptide_repeat 265 291
IPR002885 Pentatricopeptide_repeat 614 656
IPR002885 Pentatricopeptide_repeat 469 516
IPR002885 Pentatricopeptide_repeat 528 588
IPR002885 Pentatricopeptide_repeat 318 378
IPR002885 Pentatricopeptide_repeat 388 448
No external refs found!