Sopen08g015980

Description : FAR1 DNA-binding domain

Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g015980
Cluster	HCCA clusters: Cluster_368

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os03g08370	No alias	transposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Solyc07g042600	No alias	Transposon-like element Lyt2-2 DNA (AHRD V3.3 *** D5MNY6_SOLLC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR018289	MULE_transposase_dom	273	365
IPR004330	FAR1_DNA_bnd_dom	67	153
IPR007527	Znf_SWIM	563	588

External Links

No external refs found!