Sopen08g016250

Description : Glycosyl hydrolases family 28

Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g016250
Cluster	HCCA clusters: Cluster_292

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14444	No alias	putative polygalacturonase	0.02	Orthogroups_2024-Update
GRMZM2G004500	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.09G224800	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
PSME_00025694-RA	No alias	(at1g80170 : 422.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	54	245

External Links

No external refs found!