Solyc02g082180


Description : DNA helicase (AHRD V3.3 *** K4BA88_SOLLC)


Gene families : OG_42_0006875 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006875_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g082180
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
A4A49_25314 No alias dna replication licensing factor mcm6 0.04 Orthogroups_2024-Update
Brara.F03728.1 No alias component *(MCM6) of MCM replicative DNA helicase complex 0.06 Orthogroups_2024-Update
Cre03.g178650 No alias minichromosome maintenance (MCM2/3/5) family protein 0.07 Orthogroups_2024-Update
GRMZM2G021069 No alias minichromosome maintenance (MCM2/3/5) family protein 0.04 Orthogroups_2024-Update
Glyma.09G047300 No alias minichromosome maintenance (MCM2/3/5) family protein 0.1 Orthogroups_2024-Update
Glyma.15G154900 No alias minichromosome maintenance (MCM2/3/5) family protein 0.07 Orthogroups_2024-Update
Kfl00029_0270 kfl00029_0270_v1.1 (at5g44635 : 779.0) MINICHROMOSOME MAINTENANCE 6 (MCM6);... 0.08 Orthogroups_2024-Update
MA_15713g0010 No alias (at5g44635 : 1125.0) MINICHROMOSOME MAINTENANCE 6... 0.03 Orthogroups_2024-Update
Mp4g14930.1 No alias component MCM6 of MCM replicative DNA helicase complex 0.05 Orthogroups_2024-Update
Potri.001G074000 No alias minichromosome maintenance (MCM2/3/5) family protein 0.03 Orthogroups_2024-Update
Pp1s210_36V6 No alias minichromosome maintenance protein 0.03 Orthogroups_2024-Update
Seita.3G082800.1 No alias component *(MCM6) of MCM replicative DNA helicase complex 0.07 Orthogroups_2024-Update
Sobic.009G087000.1 No alias component *(MCM6) of MCM replicative DNA helicase complex 0.14 Orthogroups_2024-Update
Sopen02g026840 No alias MCM2/3/5 family 0.1 Orthogroups_2024-Update
evm.model.contig_429.9 No alias (at5g44635 : 608.0) MINICHROMOSOME MAINTENANCE 6 (MCM6);... 0.05 Orthogroups_2024-Update
evm.model.tig00020918.5 No alias (at5g44635 : 634.0) MINICHROMOSOME MAINTENANCE 6 (MCM6);... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006260 DNA replication IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR027925 MCM_N 21 115
IPR033762 MCM_OB 122 250
IPR001208 MCM_dom 335 657
No external refs found!