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  5. Solyc02g082360

Solyc02g082360


Description : Eukaryotic translation initiation factor 6 (AHRD V3.3 *** K4BAA6_SOLLC)


Gene families : OG_42_0002701 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002701_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g082360
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Bradi2g10857 No alias Translation initiation factor IF6 0.04 Orthogroups_2024-Update
PSME_00005095-RA No alias (at3g55620 : 427.0) embryo defective 1624 (emb1624);... 0.03 Orthogroups_2024-Update
Potri.007G064800 No alias Translation initiation factor IF6 0.03 Orthogroups_2024-Update
Solyc12g010210 No alias Eukaryotic translation initiation factor 6 (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0042256 mature ribosome assembly IEA InterProScan predictions
MF GO:0043022 ribosome binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002769 eIF6 48 172
No external refs found!