Sopen08g019030


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g019030
Cluster HCCA clusters: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g33530 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g05380 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sopen01g032290 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen05g018820 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g026230 No alias GAG-pre-integrase domain 0.03 Orthogroups_2024-Update
Sopen06g031740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g010550 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g010500 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013103 RVT_2 1105 1287
IPR001584 Integrase_cat-core 769 836
IPR001878 Znf_CCHC 281 296
IPR025724 GAG-pre-integrase_dom 686 756
No external refs found!