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  5. Solyc02g082420

Solyc02g082420


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g082420
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
At4g09100 No alias RING-H2 finger protein ATL39... 0.02 Orthogroups_2024-Update
Bradi1g15627 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g29611 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Bradi2g26383 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g46040 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g11880 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00287.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.A00708.1 No alias regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1) 0.03 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.C02593.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.K00768.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.09G067900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G231400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G042300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G232800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G028440.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU5Hr1G082840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os10g39450 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_37930g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_904294g0010 No alias (at1g72310 : 107.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
PSME_00033978-RA No alias (at5g01880 : 110.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.014G076800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G109600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g088440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc01g095180 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G61550.1) 0.03 Orthogroups_2024-Update
Sopen11g005110 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.tig00000367.17 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 104 147
No external refs found!