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  5. Sopen08g019820

Sopen08g019820


Description : 3' exoribonuclease family, domain 1


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen08g019820
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.06 Orthogroups_2024-Update
Glyma.16G036100 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
Pp1s307_19V6 No alias polyribonucleotide nucleotidyltransferase 0.02 Orthogroups_2024-Update
Seita.2G044800.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 Orthogroups_2024-Update
Sobic.002G045700.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 Orthogroups_2024-Update
Solyc08g066120 No alias polyribonucleotide nucleotidyltransferase (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Solyc08g066140 No alias Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *-*... 0.06 Orthogroups_2024-Update
evm.model.tig00020603.85 No alias (at5g14580 : 224.0) polyribonucleotide... 0.01 Orthogroups_2024-Update
evm.model.tig00021073.40 No alias (at5g14580 : 307.0) polyribonucleotide... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 698 755
IPR015847 ExoRNase_PH_dom2 232 295
IPR001247 ExoRNase_PH_dom1 457 591
IPR001247 ExoRNase_PH_dom1 99 229
IPR003029 S1_domain 763 833
No external refs found!