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  5. Sopen08g020340

Sopen08g020340


Description : GATA zinc finger


Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g020340
Cluster HCCA clusters: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
Brara.I03425.1 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
HORVU5Hr1G005990.5 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Pp1s241_7V6 No alias F26P21.10; zinc finger (GATA type) family protein... 0.03 Orthogroups_2024-Update
Seita.9G325200.1 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Seita.9G542200.1 No alias transcription factor *(A/B-GATA) 0.02 Orthogroups_2024-Update
Solyc05g053500 No alias GATA transcription factor, putative (AHRD V3.3 *** B9RWP4_RICCO) 0.03 Orthogroups_2024-Update
Sopen01g026800 No alias GATA zinc finger 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000679 Znf_GATA 257 290
No external refs found!