Sopen08g021560

Description : ABC-2 type transporter

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g021560
Cluster	HCCA clusters: Cluster_411

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g35680	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
Brara.F01033.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Brara.F01034.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Sobic.001G190700.2	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.003G216232.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Solyc08g067620	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc12g100190	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR029481	ABC_trans_N	85	145
IPR013525	ABC_2_trans	1182	1396
IPR013525	ABC_2_trans	506	718
IPR013581	PDR_assoc	723	788
IPR003439	ABC_transporter-like	170	352
IPR003439	ABC_transporter-like	885	1037

External Links

No external refs found!