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Description : High mobility group protein (AHRD V3.3 *** O49948_SOLTU)
Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc02g082700 | |
| Cluster | HCCA clusters: Cluster_209 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.A00281.1 | No alias | DNA bending architectural protein *(HMG-B) | 0.02 | Orthogroups_2024-Update | |
| Cre11.g480950 | No alias | high mobility group B3 | 0.01 | Orthogroups_2024-Update | |
| Glyma.04G016800 | No alias | high mobility group B2 | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G190500 | No alias | HMG-box (high mobility group) DNA-binding family protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.10G288300 | No alias | high-mobility group box 6 | 0.04 | Orthogroups_2024-Update | |
| Glyma.16G116300 | No alias | high mobility group B2 | 0.03 | Orthogroups_2024-Update | |
| Kfl00271_0080 | kfl00271_0080_v1.1 | (at5g23420 : 89.4) Encodes HMGB6, a protein belonging to... | 0.02 | Orthogroups_2024-Update | |
| MA_687839g0010 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| MA_86565g0010 | No alias | (at5g23420 : 100.0) Encodes HMGB6, a protein belonging... | 0.04 | Orthogroups_2024-Update | |
| PSME_00011212-RA | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update | |
| PSME_00037596-RA | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| Potri.010G189900 | No alias | high mobility group B1 | 0.03 | Orthogroups_2024-Update | |
| Pp1s88_210V6 | No alias | high mobility group family | 0.02 | Orthogroups_2024-Update | |
| Seita.6G001400.1 | No alias | DNA bending architectural protein *(HMG-B) | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G000500.1 | No alias | DNA bending architectural protein *(HMG-B) | 0.04 | Orthogroups_2024-Update | |
| Sopen02g027450 | No alias | HMG (high mobility group) box | 0.07 | Orthogroups_2024-Update | |
| Sopen04g004000 | No alias | HMG (high mobility group) box | 0.06 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0005351 | carbohydrate:proton symporter activity | IEP | Predicted GO |
| MF | GO:0005402 | carbohydrate:cation symporter activity | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006353 | DNA-templated transcription, termination | IEP | Predicted GO |
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
| MF | GO:0008318 | protein prenyltransferase activity | IEP | Predicted GO |
| BP | GO:0008643 | carbohydrate transport | IEP | Predicted GO |
| MF | GO:0009678 | hydrogen-translocating pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0015144 | carbohydrate transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015293 | symporter activity | IEP | Predicted GO |
| MF | GO:0015294 | solute:cation symporter activity | IEP | Predicted GO |
| MF | GO:0015295 | solute:proton symporter activity | IEP | Predicted GO |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
| BP | GO:0018342 | protein prenylation | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Predicted GO |
| BP | GO:0097354 | prenylation | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009071 | HMG_box_dom | 36 | 105 |
| No external refs found! |