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  5. Solyc02g082920

Solyc02g082920


Description : acidic extracellular 26 kD chitinase


Gene families : OG_42_0000472 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000472_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g082920
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
At3g12500 No alias Basic endochitinase B [Source:UniProtKB/Swiss-Prot;Acc:P19171] 0.03 Orthogroups_2024-Update
Bradi2g11140 No alias Chitinase family protein 0.03 Orthogroups_2024-Update
Bradi2g26000 No alias basic chitinase 0.04 Orthogroups_2024-Update
Brara.I00101.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00098.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G064360 No alias Chitinase family protein 0.02 Orthogroups_2024-Update
LOC_Os03g04060 No alias CHIT16 - Chitinase family protein precursor, expressed 0.03 Orthogroups_2024-Update
MA_8921185g0010 No alias (q9frv0|chic_secce : 129.0) Basic endochitinase C... 0.02 Orthogroups_2024-Update
PSME_00050349-RA No alias (p52403|chi1_soltu : 337.0) Endochitinase 1 precursor... 0.03 Orthogroups_2024-Update
Sobic.009G012100.1 No alias basic chitinase *(CHIB) 0.04 Orthogroups_2024-Update
Solyc10g055820 No alias Chitinase (AHRD V3.3 *** B9VRK7_CAPAN) 0.05 Orthogroups_2024-Update
Sopen02g027750 No alias Chitinase class I 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA InterProScan predictions
BP GO:0006032 chitin catabolic process IEA InterProScan predictions
BP GO:0016998 cell wall macromolecule catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 30 244
No external refs found!