Sopen08g024790


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g024790
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
105356 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
92008 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12441 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
A4A49_32855 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
At1g31920 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Orthogroups_2024-Update
At2g46050 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.03 Orthogroups_2024-Update
At5g16860 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Orthogroups_2024-Update
Brara.E01751.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.03 Orthogroups_2024-Update
GRMZM2G399433 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G011300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Glyma.01G011700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G213800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G163300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G018170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
HORVU6Hr1G067620.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os06g27790 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_104937g0010 No alias (at2g03880 : 576.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.02 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_86628g0010 No alias (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00010496-RA No alias (at2g22070 : 627.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056826-RA No alias (at2g13600 : 495.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Seita.5G405500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G153300.2 No alias RNA editing factor *(MEF21) 0.01 Orthogroups_2024-Update
Sobic.008G047100.1 No alias RNA editing factor *(REME2/PGL1) 0.05 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.08 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g096510 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g039430 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 96 143
IPR002885 Pentatricopeptide_repeat 297 345
IPR002885 Pentatricopeptide_repeat 170 195
IPR002885 Pentatricopeptide_repeat 199 228
IPR002885 Pentatricopeptide_repeat 373 397
IPR032867 DYW_dom 473 595
No external refs found!