Sopen08g025270

Description : ABC transporter transmembrane region

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g025270
Cluster	HCCA clusters: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
139408	No alias	P-glycoprotein 20	0.02	Orthogroups_2024-Update
176522	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
84555	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
A4A49_07249	No alias	abc transporter b family member 19	0.03	Orthogroups_2024-Update
A4A49_25017	No alias	abc transporter b family member 9	0.03	Orthogroups_2024-Update
Brara.D02827.1	No alias	subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Brara.F00715.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Brara.F03152.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Brara.I02993.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Brara.K00467.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
GRMZM2G004748	No alias	P-glycoprotein 2	0.02	Orthogroups_2024-Update
GRMZM2G167658	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
Glyma.14G220200	No alias	P-glycoprotein 13	0.04	Orthogroups_2024-Update
Glyma.18G154200	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
Glyma.20G239800	No alias	P-glycoprotein 20	0.02	Orthogroups_2024-Update
Kfl00008_0360	kfl00008_0360_v1.1	(at1g02520 : 1200.0) P-glycoprotein 11 (PGP11);...	0.02	Orthogroups_2024-Update
Kfl00023_0200	kfl00023_0200_v1.1	(at3g62150 : 1239.0) P-glycoprotein 21 (PGP21);...	0.02	Orthogroups_2024-Update
LOC_Os01g74470	No alias	ABC transporter, ATP-binding protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g05690	No alias	ABC transporter, ATP-binding protein, putative, expressed	0.02	Orthogroups_2024-Update
Mp2g11920.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Mp7g16060.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Potri.001G139700	No alias	P-glycoprotein 2	0.03	Orthogroups_2024-Update
Pp1s173_145V6	No alias	multidrug resistance protein	0.02	Orthogroups_2024-Update
Seita.1G191000.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Seita.1G280600.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Sobic.003G281400.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
evm.model.tig00020952.7	No alias	(at4g25960 : 162.0) P-glycoprotein 2 (PGP2); FUNCTIONS...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	1015	1163
IPR003439	ABC_transporter-like	380	528
IPR011527	ABC1_TM_dom	38	309
IPR011527	ABC1_TM_dom	678	949

External Links

No external refs found!

Sopen08g025270

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation