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  5. Sopen08g025380

Sopen08g025380


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g025380
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g35520 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g13690 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
LOC_Os10g26330 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sobic.006G001700.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc02g061920 No alias LOW QUALITY:Retrovirus-related Pol polyprotein from... 0.02 Orthogroups_2024-Update
Sopen01g008570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen01g033880 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g003660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g005450 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen02g008840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen02g026060 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen03g008810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen03g027510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g010840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g015750 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen07g021230 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen08g012530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen09g024120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g025260 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g012450 No alias gag-polypeptide of LTR copia-type 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 543 658
IPR025724 GAG-pre-integrase_dom 459 530
IPR029472 Copia-like_N 24 63
IPR013103 RVT_2 928 1169
No external refs found!