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  5. Sopen08g025900

Sopen08g025900


Description : PPR repeat


Gene families : OG_42_0010278 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010278_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g025900
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G138012 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G069000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Sobic.002G167400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g077320 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 496 521
IPR002885 Pentatricopeptide_repeat 228 257
IPR002885 Pentatricopeptide_repeat 321 347
IPR002885 Pentatricopeptide_repeat 259 285
IPR002885 Pentatricopeptide_repeat 290 320
IPR002885 Pentatricopeptide_repeat 421 468
No external refs found!