Sopen08g026360

Description : SpoU rRNA Methylase family

Gene families : OG_42_0002741 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002741_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g026360
Cluster	HCCA clusters: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g78610	No alias	tRNA/rRNA methyltransferase (SpoU) family protein	0.09	Orthogroups_2024-Update
Brara.A00891.1	No alias	tRNA guanine-methyltransferase *(TRM3)	0.04	Orthogroups_2024-Update
Cre15.g637350	No alias	tRNA/rRNA methyltransferase (SpoU) family protein	0.02	Orthogroups_2024-Update
Glyma.17G148200	No alias	tRNA/rRNA methyltransferase (SpoU) family protein	0.06	Orthogroups_2024-Update
Kfl00768_0030	kfl00768_0030_v1.1	(at4g17610 : 561.0) tRNA/rRNA methyltransferase (SpoU)...	0.02	Orthogroups_2024-Update
Mp3g08720.1	No alias	tRNA guanosine-methyltransferase (TRM3)	0.02	Orthogroups_2024-Update
Seita.9G579800.1	No alias	tRNA guanine-methyltransferase *(TRM3)	0.03	Orthogroups_2024-Update
Sobic.001G544300.1	No alias	tRNA guanine-methyltransferase *(TRM3)	0.08	Orthogroups_2024-Update
Solyc08g077850	No alias	tRNA/rRNA methyltransferase family protein (AHRD V3.3...	0.06	Orthogroups_2024-Update
evm.model.tig00020812.10	No alias	(at4g17610 : 182.0) tRNA/rRNA methyltransferase (SpoU)...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	1588	1730

External Links

No external refs found!

Sopen08g026360

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation