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  5. Sopen08g027120

Sopen08g027120


Description : Pectinesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g027120
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
164202 No alias pectin methylesterase 31 0.02 Orthogroups_2024-Update
A4A49_27669 No alias pectinesterase 2 0.03 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
At2g47280 No alias Probable pectinesterase 66... 0.03 Orthogroups_2024-Update
Glyma.11G032700 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.17G141700 No alias Pectin lyase-like superfamily protein 0.12 Orthogroups_2024-Update
MA_10267810g0010 No alias (at5g47500 : 480.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
MA_28575g0010 No alias (at5g47500 : 447.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.006G186000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.002G370300.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.005G217101.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc08g078640 No alias Pectinesterase (AHRD V3.3 *** K4CNM3_SOLLC) 0.18 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 53 345
No external refs found!