Sopen08g028600

Description : APO RNA-binding

Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g028600
Cluster	HCCA clusters: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36605	No alias	apo protein 2, chloroplastic	0.04	Orthogroups_2024-Update
Bradi3g56890	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.04	Orthogroups_2024-Update
Bradi5g21780	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.03	Orthogroups_2024-Update
Brara.E02044.1	No alias	organelle RNA splicing factor *(APO)	0.03	Orthogroups_2024-Update
MA_931234g0010	No alias	(at1g64810 : 397.0) chloroplast APO1; ACCUMULATION OF...	0.02	Orthogroups_2024-Update
Potri.017G037200	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.02	Orthogroups_2024-Update
Potri.018G106400	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.04	Orthogroups_2024-Update
Sobic.006G214700.1	No alias	organelle RNA splicing factor *(APO)	0.03	Orthogroups_2024-Update
Solyc08g080250	No alias	APO protein 1 (AHRD V3.3 *** F4I896_ARATH)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023342	APO_dom	305	416
IPR023342	APO_dom	68	264

External Links

No external refs found!