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  5. Sopen08g029810

Sopen08g029810


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g029810
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
Brara.C03174.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.H02383.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
GRMZM2G174598 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G146800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G117470.3 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Kfl00636_0040 kfl00636_0040_v1.1 (at3g42950 : 341.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
LOC_Os05g50960 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.005G063400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G211500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G112100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s16_66V6 No alias polygalacturonase 0.03 Orthogroups_2024-Update
Solyc09g075460 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G16850.1) 0.03 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 150 431
No external refs found!