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  5. Sopen08g030360

Sopen08g030360


Description : HMG (high mobility group) box


Gene families : OG_42_0004409 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g030360
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
73858 No alias HMG (high mobility group) box protein 0.11 Orthogroups_2024-Update
A4A49_04727 No alias high mobility group b protein 6 0.02 Orthogroups_2024-Update
At4g11080 No alias High mobility group B protein 13... 0.03 Orthogroups_2024-Update
At4g23800 No alias High mobility group B protein 6... 0.04 Orthogroups_2024-Update
Brara.A01385.1 No alias DNA bending architectural protein *(HMG-B) 0.08 Orthogroups_2024-Update
Brara.I02554.1 No alias DNA bending architectural protein *(HMG-B) 0.14 Orthogroups_2024-Update
Glyma.05G215500 No alias HMG (high mobility group) box protein 0.08 Orthogroups_2024-Update
Glyma.08G021700 No alias HMG (high mobility group) box protein 0.16 Orthogroups_2024-Update
Kfl00059_0200 kfl00059_0200_v1.... (at4g23800 : 191.0) HMG (high mobility group) box... 0.08 Orthogroups_2024-Update
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.1 Orthogroups_2024-Update
PSME_00006829-RA No alias (at4g23800 : 271.0) HMG (high mobility group) box... 0.02 Orthogroups_2024-Update
Potri.001G093700 No alias HMG (high mobility group) box protein 0.08 Orthogroups_2024-Update
Pp1s2_357V6 No alias high mobility group family 0.02 Orthogroups_2024-Update
Solyc08g082070 No alias High mobility group family protein (AHRD V3.3 *** B9GL80_POPTR) 0.33 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 176 237
IPR009071 HMG_box_dom 292 359
IPR009071 HMG_box_dom 420 488
No external refs found!