Sopen08g030910

Description : Ribosomal protein S6

Gene families : OG_42_0007385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007385_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g030910
Cluster	HCCA clusters: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
58368	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.04	Orthogroups_2024-Update
A4A49_03704	No alias	30s ribosomal protein s6 alpha, chloroplastic	0.08	Orthogroups_2024-Update
A4A49_12743	No alias	30s ribosomal protein s6 alpha, chloroplastic	0.09	Orthogroups_2024-Update
Bradi1g02030	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.1	Orthogroups_2024-Update
Brara.I01293.1	No alias	component *(uS6c) of small plastid ribosomal-subunit proteome	0.15	Orthogroups_2024-Update
Brara.I01316.1	No alias	component *(uS6c) of small plastid ribosomal-subunit proteome	0.09	Orthogroups_2024-Update
Cre12.g520600	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.13	Orthogroups_2024-Update
GRMZM2G118005	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.06	Orthogroups_2024-Update
Glyma.05G218800	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.12	Orthogroups_2024-Update
Glyma.08G024900	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.05	Orthogroups_2024-Update
HORVU5Hr1G120250.1	No alias	component *(uS6c) of small plastid ribosomal-subunit proteome	0.17	Orthogroups_2024-Update
Kfl00077_0230	kfl00077_0230_v1.1	(p82403\|rr6_spiol : 125.0) 30S ribosomal protein S6...	0.08	Orthogroups_2024-Update
LOC_Os03g62630	No alias	ribosomal protein S6, putative, expressed	0.03	Orthogroups_2024-Update
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.02	Orthogroups_2024-Update
Potri.001G088300	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.09	Orthogroups_2024-Update
Pp1s24_129V6	No alias	ribosomal protein s6	0.04	Orthogroups_2024-Update
Pp1s359_29V6	No alias	ribosomal protein s6	0.06	Orthogroups_2024-Update
Seita.9G016600.1	No alias	component *(uS6c) of small plastid ribosomal-subunit proteome	0.12	Orthogroups_2024-Update
Sobic.001G017000.1	No alias	component *(uS6c) of small plastid ribosomal-subunit proteome	0.04	Orthogroups_2024-Update
Solyc08g082690	No alias	Ribosomal protein S6 (AHRD V3.3 *** A0A103XFW4_CYNCS)	0.11	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	93	190

External Links

No external refs found!

Sopen08g030910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation