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  5. Sopen09g002200

Sopen09g002200


Description : PPR repeat family


Gene families : OG_42_0004570 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g002200
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
A4A49_07185 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.07 Orthogroups_2024-Update
PSME_00045169-RA No alias (at3g09650 : 467.0) RNA binding protein involved in the... 0.02 Orthogroups_2024-Update
PSME_00052095-RA No alias (at3g09650 : 486.0) RNA binding protein involved in the... 0.01 Orthogroups_2024-Update
Potri.016G085300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 550 595
IPR002885 Pentatricopeptide_repeat 408 457
IPR002885 Pentatricopeptide_repeat 221 269
IPR002885 Pentatricopeptide_repeat 478 526
IPR002885 Pentatricopeptide_repeat 374 402
No external refs found!