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  5. Sopen09g002840

Sopen09g002840


Description : Sigma-70 region 3


Gene families : OG_42_0001174 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g002840
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
A4A49_08063 No alias rna polymerase sigma factor sigc 0.02 Orthogroups_2024-Update
Bradi2g14567 No alias RNApolymerase sigma-subunit C 0.02 Orthogroups_2024-Update
Brara.H02868.1 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G044910.9 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update
Potri.006G125700 No alias RNApolymerase sigma-subunit F 0.02 Orthogroups_2024-Update
Seita.3G124300.1 No alias basal Sigma-type transcription factor 0.02 Orthogroups_2024-Update
Seita.8G112700.1 No alias basal Sigma-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G423400.1 No alias basal Sigma-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.005G110481.1 No alias basal Sigma-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 408 481
IPR007630 RNA_pol_sigma70_r4 495 548
IPR007627 RNA_pol_sigma70_r2 327 396
No external refs found!