Sopen09g002920

Description : Helicase associated domain (HA2)

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g002920
Cluster	HCCA clusters: Cluster_188

Target	Alias	Description	ECC score	Gene Family Method
At4g18465	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Orthogroups_2024-Update
Brara.B03286.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Glyma.05G146100	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
PSME_00007417-RA	No alias	(at1g33390 : 609.0) Over-expression of this gene results...	0.02	Orthogroups_2024-Update
Solyc09g008120	No alias	ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9REC8_RICCO)	0.04	Orthogroups_2024-Update
evm.model.tig00021589.28	No alias	(at3g26560 : 335.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	472	589
IPR011709	DUF1605	629	706
IPR001650	Helicase_C	277	407

External Links

No external refs found!