Sopen09g004140

Description : APO RNA-binding

Gene families : OG_42_0001137 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g004140
Cluster	HCCA clusters: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
84056	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.02	Orthogroups_2024-Update
At1g64810	No alias	APO RNA-binding protein (DUF794)...	0.02	Orthogroups_2024-Update
Glyma.13G307200	No alias	Arabidopsis thaliana protein of unknown function (DUF794)	0.03	Orthogroups_2024-Update
PSME_00034300-RA	No alias	(at5g61930 : 382.0) ACCUMULATION OF PHOTOSYSTEM ONE 3;...	0.02	Orthogroups_2024-Update
Seita.7G236600.1	No alias	organelle RNA splicing factor *(APO)	0.02	Orthogroups_2024-Update
Solyc09g009400	No alias	APO protein 3, mitochondrial, putative (AHRD V3.3 ***...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023342	APO_dom	37	222
IPR023342	APO_dom	267	377

External Links

No external refs found!