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  5. Sopen09g004550

Sopen09g004550


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g004550
Cluster HCCA clusters: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
30095 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
34785 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
92008 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.05 Orthogroups_2024-Update
At4g30700 No alias MEF29 [Source:UniProtKB/TrEMBL;Acc:A0A178UUW3] 0.03 Orthogroups_2024-Update
At5g56310 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.05 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Brara.B00112.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03491.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G03165.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Brara.J02567.1 No alias RNA editing factor *(MEF37) 0.03 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.02 Orthogroups_2024-Update
GRMZM2G057176 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G227900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G058280.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G101000.3 No alias RNA editing factor *(DEK36) 0.04 Orthogroups_2024-Update
MA_136188g0010 No alias (at1g11290 : 582.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00022404-RA No alias (at3g57430 : 647.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00045505-RA No alias (at2g22070 : 613.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
Potri.018G152300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G077500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.5G361000.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 76 124
IPR002885 Pentatricopeptide_repeat 278 326
IPR002885 Pentatricopeptide_repeat 177 225
IPR002885 Pentatricopeptide_repeat 354 378
No external refs found!