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  5. Glyma.01G066300

Glyma.01G066300


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.01G066300
Cluster HCCA clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
A4A49_15905 No alias putative pectinesterase 8 0.03 Orthogroups_2024-Update
Bradi1g21810 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02274.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.J01617.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
GRMZM2G177940 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G125100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os04g46740 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g41650 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g12410 No alias pectinesterase, putative, expressed 0.04 Orthogroups_2024-Update
MA_101720g0010 No alias (at3g29090 : 389.0) Encodes an atypical pectin... 0.03 Orthogroups_2024-Update
Mp5g03920.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Mp5g03930.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
PSME_00045931-RA No alias (at5g47500 : 448.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.006G137100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s175_19V6 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
Pp1s461_15V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.3G333900.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.5G027700.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.8G237600.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.008G131300.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 71 356
No external refs found!