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  5. Glyma.01G115900

Glyma.01G115900


Description : light harvesting complex photosystem II


Gene families : OG_42_0004123 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.01G115900
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
At3g08940 No alias Chlorophyll a-b binding protein CP29.2, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi1g24870 No alias light harvesting complex photosystem II 0.05 Orthogroups_2024-Update
Brara.B00018.1 No alias component *(LHCb4) of LHC-II complex 0.05 Orthogroups_2024-Update
Brara.E03123.1 No alias component *(LHCb4) of LHC-II complex 0.07 Orthogroups_2024-Update
Cre17.g720250 No alias light harvesting complex photosystem II 0.04 Orthogroups_2024-Update
HORVU2Hr1G041270.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU2Hr1G041280.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00258_0020 kfl00258_0020_v1.1 (at5g01530 : 324.0) light harvesting complex photosystem... 0.09 Orthogroups_2024-Update
LOC_Os07g37240 No alias chlorophyll A-B binding protein, putative, expressed 0.05 Orthogroups_2024-Update
MA_129206g0010 No alias (at2g40100 : 288.0) Lhcb4:3 protein (Lhcb4.3, light... 0.04 Orthogroups_2024-Update
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.07 Orthogroups_2024-Update
Potri.006G099500 No alias light harvesting complex photosystem II 0.06 Orthogroups_2024-Update
Pp1s472_15V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Seita.2G351600.1 No alias component *(LHCb4) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.002G338000.1 No alias component *(LHCb4) of LHC-II complex 0.07 Orthogroups_2024-Update
Solyc09g014520 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.07 Orthogroups_2024-Update
Sopen09g007360 No alias Chlorophyll A-B binding protein 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 63 259
No external refs found!