Glyma.01G162200

Description : RNA polymerase II large subunit

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.01G162200
Cluster	HCCA clusters: Cluster_286

Target	Alias	Description	ECC score	Gene Family Method
110201	No alias	RNA polymerase II large subunit	0.05	Orthogroups_2024-Update
Bradi3g16660	No alias	RNA polymerase II large subunit	0.04	Orthogroups_2024-Update
Bradi3g43050	No alias	nuclear RNA polymerase C1	0.03	Orthogroups_2024-Update
GRMZM2G044306	No alias	RNA polymerase II large subunit	0.03	Orthogroups_2024-Update
HORVU7Hr1G037130.2	No alias	component *(NRPB1) of RNA polymerase II complex	0.02	Orthogroups_2024-Update
Kfl00243_0080	kfl00243_0080_v1.1	(at5g60040 : 1445.0) Encodes a subunit of RNA polymerase...	0.07	Orthogroups_2024-Update
Kfl00550_0020	kfl00550_0020_v1.1	(at4g35800 : 2125.0) Encodes the unique largest subunit...	0.02	Orthogroups_2024-Update
MA_8544g0010	No alias	(at4g35800 : 1838.0) Encodes the unique largest subunit...	0.05	Orthogroups_2024-Update
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.03	Orthogroups_2024-Update
PSME_00000873-RA	No alias	(at4g35800 : 2661.0) Encodes the unique largest subunit...	0.06	Orthogroups_2024-Update
Pp1s460_26V6	No alias	rna polymerase ii large subunit	0.04	Orthogroups_2024-Update
Seita.6G058200.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update
Sobic.007G044100.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.04	Orthogroups_2024-Update
Sopen02g027960	No alias	RNA polymerase Rpb1, domain 1	0.02	Orthogroups_2024-Update
evm.model.tig00000241.15	No alias	(at4g35800 : 1627.0) Encodes the unique largest subunit...	0.03	Orthogroups_2024-Update
evm.model.tig00022075.5	No alias	(at5g60040 : 328.0) Encodes a subunit of RNA polymerase...	0.01	Orthogroups_2024-Update
evm.model.tig00022075.6	No alias	(at5g60040 : 442.0) Encodes a subunit of RNA polymerase...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006366	transcription by RNA polymerase II	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0004402	histone acetyltransferase activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006473	protein acetylation	IEP	Predicted GO
BP	GO:0006475	internal protein amino acid acetylation	IEP	Predicted GO
BP	GO:0006476	protein deacetylation	IEP	Predicted GO
BP	GO:0006606	protein import into nucleus	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
BP	GO:0006996	organelle organization	IEP	Predicted GO
MF	GO:0008080	N-acetyltransferase activity	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0016407	acetyltransferase activity	IEP	Predicted GO
MF	GO:0016410	N-acyltransferase activity	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016573	histone acetylation	IEP	Predicted GO
BP	GO:0016575	histone deacetylation	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0017069	snRNA binding	IEP	Predicted GO
MF	GO:0017070	U6 snRNA binding	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Predicted GO
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0030623	U5 snRNA binding	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0033365	protein localization to organelle	IEP	Predicted GO
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0034504	protein localization to nucleus	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0035601	protein deacylation	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043543	protein acylation	IEP	Predicted GO
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051170	import into nucleus	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0051276	chromosome organization	IEP	Predicted GO
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predicted GO
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
BP	GO:0098732	macromolecule deacylation	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predicted GO
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	352	520
IPR007081	RNA_pol_Rpb1_5	825	1415
IPR007075	RNA_pol_Rpb1_6	891	1075
IPR000684	RNA_pol_II_repeat_euk	1600	1613
IPR000684	RNA_pol_II_repeat_euk	1586	1599
IPR000684	RNA_pol_II_repeat_euk	1558	1571
IPR000684	RNA_pol_II_repeat_euk	1579	1592
IPR000684	RNA_pol_II_repeat_euk	1628	1641
IPR000684	RNA_pol_II_repeat_euk	1593	1606
IPR000684	RNA_pol_II_repeat_euk	1642	1655
IPR000684	RNA_pol_II_repeat_euk	1565	1578
IPR000684	RNA_pol_II_repeat_euk	1759	1772
IPR000684	RNA_pol_II_repeat_euk	1536	1550
IPR000684	RNA_pol_II_repeat_euk	1656	1669
IPR000684	RNA_pol_II_repeat_euk	1745	1758
IPR000684	RNA_pol_II_repeat_euk	1614	1627
IPR000684	RNA_pol_II_repeat_euk	1551	1564
IPR000684	RNA_pol_II_repeat_euk	1572	1585
IPR000684	RNA_pol_II_repeat_euk	1670	1683
IPR000684	RNA_pol_II_repeat_euk	1712	1725
IPR000684	RNA_pol_II_repeat_euk	1607	1620
IPR000684	RNA_pol_II_repeat_euk	1684	1697
IPR000684	RNA_pol_II_repeat_euk	1698	1711
IPR007083	RNA_pol_Rpb1_4	715	818
IPR007080	RNA_pol_Rpb1_1	14	350
IPR007073	RNA_pol_Rpb1_7	1160	1294
IPR007066	RNA_pol_Rpb1_3	524	687

External Links

No external refs found!

Glyma.01G162200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation