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  5. Glyma.01G175300

Glyma.01G175300


Description : chromatin remodeling 1


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.01G175300
Cluster HCCA clusters: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
A4A49_03849 No alias protein chromatin remodeling 4 0.04 Orthogroups_2024-Update
Brara.I00886.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I01861.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.05 Orthogroups_2024-Update
Cre03.g158550 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
Kfl00030_0270 kfl00030_0270_v1.1 (at5g66750 : 640.0) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
Kfl00142_0080 kfl00142_0080_v1.... (q7g8y3|isw2_orysa : 220.0) Probable chromatin... 0.03 Orthogroups_2024-Update
MA_104034g0010 No alias (at5g66750 : 811.0) Protein is similar to SWI2/SNF2... 0.03 Orthogroups_2024-Update
Sobic.002G021200.1 No alias chromatin remodeling factor *(DDM1) 0.04 Orthogroups_2024-Update
Solyc02g085390 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.06 Orthogroups_2024-Update
Sopen11g023970 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.tig00000128.11 No alias (at5g18620 : 692.0) chromatin remodeling factor17... 0.01 Orthogroups_2024-Update
evm.model.tig00000144.188 No alias (at5g66750 : 92.4) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 520 630
IPR000330 SNF2_N 149 494
No external refs found!