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  5. Sopen09g008730

Sopen09g008730


Description : Polysaccharide lyase family 4, domain III


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g008730
Cluster HCCA clusters: Cluster_400

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G091300 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.06G092900 No alias Rhamnogalacturonate lyase family protein 0.04 Orthogroups_2024-Update
Potri.005G151500 No alias Rhamnogalacturonate lyase family protein 0.02 Orthogroups_2024-Update
Solyc04g014430 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 198 269
IPR029411 RG-lyase_III 283 418
IPR010325 Rhamnogal_lyase 1 43
IPR000477 RT_dom 500 618
No external refs found!