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  5. Glyma.01G235800

Glyma.01G235800


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0004009 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004009_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.01G235800
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Bradi1g08840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.9G095200.1 No alias splicing factor *(MISF) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 288 345
IPR002885 Pentatricopeptide_repeat 164 189
IPR002885 Pentatricopeptide_repeat 198 227
IPR033443 PPR_long 347 514
No external refs found!