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  5. Glyma.02G000600

Glyma.02G000600


Description : PENTATRICOPEPTIDE REPEAT 596


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G000600
Cluster HCCA clusters: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
402120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
402234 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
444771 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g02370 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.09 Orthogroups_2024-Update
At1g15480 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.03 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.06 Orthogroups_2024-Update
At2g20710 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Orthogroups_2024-Update
At3g15590 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.03 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.07 Orthogroups_2024-Update
At4g02820 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Orthogroups_2024-Update
At5g09450 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.04 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.06 Orthogroups_2024-Update
Bradi3g30100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00312.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.08 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.09 Orthogroups_2024-Update
Brara.I01548.1 No alias component *(mL101) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
GRMZM2G160994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G045170.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G093220.6 No alias splicing factor *(CRR16) 0.03 Orthogroups_2024-Update
HORVU3Hr1G040710.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
HORVU6Hr1G016390.25 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU7Hr1G011310.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g40750 No alias PPR repeat domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g35750 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00039610-RA No alias (at5g39710 : 272.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.02 Orthogroups_2024-Update
PSME_00052183-RA No alias (at1g02150 : 315.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.002G139400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G039600 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.016G036100 No alias PENTATRICOPEPTIDE REPEAT 596 0.06 Orthogroups_2024-Update
Potri.016G063400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G079600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s19_69V6 No alias F5I6.2; DNA-binding protein, putative [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.3G349700.1 No alias splicing factor *(RTP7) 0.04 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G027300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G038700.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
Seita.9G203100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G203600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g079320 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Solyc01g089870 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc12g020050 No alias DNA-binding protein DQ117941 0.04 Orthogroups_2024-Update
Sopen01g031100 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen01g035710 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen02g023180 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen07g031410 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g002280 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen12g010730 No alias PPR repeat 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 451 479
IPR002885 Pentatricopeptide_repeat 485 508
IPR002885 Pentatricopeptide_repeat 510 566
IPR002885 Pentatricopeptide_repeat 264 320
No external refs found!