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  5. Sopen09g008960

Sopen09g008960


Description : Retrotransposon gag protein


Gene families : OG_42_0000683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g008960
Cluster HCCA clusters: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
Potri.011G012100 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.T014100 No alias Function unknown 0.03 Orthogroups_2024-Update
Sopen03g014800 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen04g022080 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen06g006890 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g006060 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen09g022170 No alias Retrotransposon gag protein 0.05 Orthogroups_2024-Update
Sopen12g025220 No alias Retrotransposon gag protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 306 392
No external refs found!