1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen09g009110

Sopen09g009110


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g009110
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Orthogroups_2024-Update
Kfl01111_0020 kfl01111_0020_v1.1 (original description: no original description) 0.03 Orthogroups_2024-Update
Kfl01162_0030 kfl01162_0030_v1.1 (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g01450 No alias retrotransposon protein, putative, Ty1-copia subclass, expressed 0.02 Orthogroups_2024-Update
Mp8g00200.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Orthogroups_2024-Update
MpVg00320.1 No alias No annotation 0.02 Orthogroups_2024-Update
Pp1s7_304V6 No alias gag-pol polyprotein 0.02 Orthogroups_2024-Update
Solyc03g043680 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Solyc07g009390 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g015410 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g039940 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g010850 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g028070 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g004360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g005860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g015960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_2214.1 No alias (p10978|polx_tobac : 144.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 186 293
IPR013103 RVT_2 296 355
No external refs found!