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  5. Glyma.02G041700

Glyma.02G041700


Description : ubiquitin family protein


Gene families : OG_42_0001515 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G041700
Cluster HCCA clusters: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G057158 No alias ubiquitin family protein 0.03 Orthogroups_2024-Update
GRMZM2G136769 No alias ubiquitin family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G052260.3 No alias ubiquitin-proteasome shuttle factor *(DSK2) 0.02 Orthogroups_2024-Update
LOC_Os10g39620 No alias ubiquitin family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_39935g0010 No alias (at2g17190 : 323.0) ubiquitin family protein; CONTAINS... 0.04 Orthogroups_2024-Update
PSME_00002468-RA No alias (at2g17200 : 104.0) DSK2; CONTAINS InterPro DOMAIN/s:... 0.04 Orthogroups_2024-Update
PSME_00024470-RA No alias (at2g17200 : 247.0) DSK2; CONTAINS InterPro DOMAIN/s:... 0.03 Orthogroups_2024-Update
PSME_00035819-RA No alias (at2g17190 : 198.0) ubiquitin family protein; CONTAINS... 0.03 Orthogroups_2024-Update
Seita.9G552700.1 No alias ubiquitin-proteasome shuttle factor *(DSK2) 0.03 Orthogroups_2024-Update
Solyc02g082800 No alias Ubiquitin 1, related protein (AHRD V3.3 *** G7K017_MEDTR) 0.03 Orthogroups_2024-Update
Sopen03g006010 No alias Ubiquitin family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR015940 UBA 503 539
IPR000626 Ubiquitin_dom 17 84
No external refs found!