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  5. Glyma.02G059900

Glyma.02G059900


Description : LIM domain-containing protein


Gene families : OG_42_0000650 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000650_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G059900
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
A4A49_09746 No alias protein da1-related 1 0.03 Orthogroups_2024-Update
A4A49_11192 No alias protein da1-related 2 0.02 Orthogroups_2024-Update
Brara.I00896.1 No alias ubiquitin-dependent protease *(DA1) 0.04 Orthogroups_2024-Update
Cre10.g424350 No alias DA1 0.02 Orthogroups_2024-Update
Glyma.01G179800 No alias LIM domain-containing protein 0.03 Orthogroups_2024-Update
PSME_00017876-RA No alias (at1g19270 : 129.0) DA1 (DA1); CONTAINS InterPro... 0.01 Orthogroups_2024-Update
PSME_00052509-RA No alias (at4g36860 : 110.0) LIM domain-containing protein;... 0.02 Orthogroups_2024-Update
Pp1s194_154V6 No alias zinc ion binding 0.03 Orthogroups_2024-Update
Seita.3G375500.1 No alias ubiquitin-dependent protease *(DA1) 0.03 Orthogroups_2024-Update
Sobic.001G425100.1 No alias ubiquitin-dependent protease *(DA1) 0.03 Orthogroups_2024-Update
Solyc02g089930 No alias Protein DA1-related 1 (AHRD V3.3 *** A0A199UXH9_ANACO) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 158 212
IPR022087 DA1-like 352 571
No external refs found!