Description : S18 ribosomal protein
Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.02G079000 | |
Cluster | HCCA clusters: Cluster_334 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
267619 | No alias | S18 ribosomal protein | 0.05 | Orthogroups_2024-Update | |
A4A49_58029 | No alias | 40s ribosomal protein s18 | 0.03 | Orthogroups_2024-Update | |
Bradi1g05670 | No alias | Ribosomal protein S13/S18 family | 0.06 | Orthogroups_2024-Update | |
Bradi1g55980 | No alias | Ribosomal protein S13/S18 family | 0.03 | Orthogroups_2024-Update | |
Brara.C02618.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.E01935.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.I02318.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.I02440.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Cre06.g272950 | No alias | Ribosomal protein S13/S18 family | 0.05 | Orthogroups_2024-Update | |
Glyma.10G221600 | No alias | Ribosomal protein S13/S18 family | 0.05 | Orthogroups_2024-Update | |
HORVU5Hr1G104720.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Kfl00001_0620 | kfl00001_0620_v1.1 | (at4g09800 : 247.0) encodes a ribosomal protein S18C, a... | 0.02 | Orthogroups_2024-Update | |
MA_10429265g0010 | No alias | (at4g09800 : 256.0) encodes a ribosomal protein S18C, a... | 0.02 | Orthogroups_2024-Update | |
Mp1g07420.1 | No alias | component RPS18 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
Mp5g02820.1 | No alias | component RPS18 of SSU proteome | 0.06 | Orthogroups_2024-Update | |
Potri.005G211200 | No alias | Ribosomal protein S13/S18 family | 0.03 | Orthogroups_2024-Update | |
Pp1s14_433V6 | No alias | 40s ribosomal protein s18 | 0.05 | Orthogroups_2024-Update | |
Pp1s215_71V6 | No alias | 40s ribosomal protein s18 | 0.07 | Orthogroups_2024-Update | |
Pp1s215_81V6 | No alias | 40s ribosomal protein s18 | 0.05 | Orthogroups_2024-Update | |
Pp1s72_222V6 | No alias | 40s ribosomal protein s18 | 0.03 | Orthogroups_2024-Update | |
Seita.5G053700.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.001G058900.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.002G049300.1 | No alias | component *(uS13) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Solyc03g078290 | No alias | Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) | 0.06 | Orthogroups_2024-Update | |
Solyc11g005680 | No alias | Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) | 0.02 | Orthogroups_2024-Update | |
Sopen03g021040 | No alias | Ribosomal protein S13/S18 | 0.04 | Orthogroups_2024-Update | |
Sopen11g001640 | No alias | Ribosomal protein S13/S18 | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2176.2 | No alias | (at4g09800 : 195.0) encodes a ribosomal protein S18C, a... | 0.08 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Predicted GO |
MF | GO:0008193 | tRNA guanylyltransferase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
MF | GO:0070568 | guanylyltransferase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001892 | Ribosomal_S13 | 14 | 142 |
No external refs found! |