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  5. Glyma.02G160400

Glyma.02G160400


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G160400
Cluster HCCA clusters: Cluster_421

Target Alias Description ECC score Gene Family Method Actions
128850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
70183 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.04 Orthogroups_2024-Update
Bradi1g14160 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g53600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi1g59070 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g04723 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g09441 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Brara.B00951.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G019670.6 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G063370.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G016720.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G064880.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G067540.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU6Hr1G052950.7 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G038460.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g59890 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g39410 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_724726g0010 No alias (at1g11290 : 611.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00001133-RA No alias (at2g03880 : 550.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00003567-RA No alias (at4g13650 : 593.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00006080-RA No alias (at4g13650 : 605.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00017380-RA No alias (at2g27610 : 683.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00029481-RA No alias (at4g18750 : 670.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Pp1s183_52V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.03 Orthogroups_2024-Update
Seita.1G077500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G031700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Seita.7G086300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G017200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G033600.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G020000.7 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.03 Orthogroups_2024-Update
Solyc10g008570 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen02g019790 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen12g032340 No alias PPR repeat 0.04 Orthogroups_2024-Update
evm.model.contig_2421.9 No alias (at5g39710 : 153.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 367
IPR002885 Pentatricopeptide_repeat 578 599
IPR002885 Pentatricopeptide_repeat 373 398
IPR002885 Pentatricopeptide_repeat 313 340
IPR002885 Pentatricopeptide_repeat 139 164
IPR002885 Pentatricopeptide_repeat 547 570
IPR002885 Pentatricopeptide_repeat 616 640
IPR032867 DYW_dom 647 770
IPR002885 Pentatricopeptide_repeat 471 518
IPR002885 Pentatricopeptide_repeat 237 286
No external refs found!