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  5. Glyma.02G201800

Glyma.02G201800


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G201800
Cluster HCCA clusters: Cluster_382

Target Alias Description ECC score Gene Family Method Actions
114142 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
131810 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
411 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
442088 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
81625 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
85415 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
Bradi5g01440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.I04699.1 No alias RNA editing factor *(MEF21) 0.03 Orthogroups_2024-Update
Brara.J00794.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G063300.4 No alias RNA editing factor *(ELI1) 0.03 Orthogroups_2024-Update
LOC_Os01g46230 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g12130 No alias EMB2261, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g39460 No alias selenium-binding protein-like, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00006159-RA No alias (at3g46790 : 260.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00030185-RA No alias (at3g57430 : 680.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G068600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G025800.1 No alias RNA editing factor *(CRR22) 0.03 Orthogroups_2024-Update
Sobic.002G048200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.02 Orthogroups_2024-Update
Solyc11g040060 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 313
IPR032867 DYW_dom 439 562
IPR002885 Pentatricopeptide_repeat 168 197
IPR002885 Pentatricopeptide_repeat 68 97
IPR002885 Pentatricopeptide_repeat 141 166
IPR002885 Pentatricopeptide_repeat 407 433
IPR002885 Pentatricopeptide_repeat 335 365
No external refs found!