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  5. Glyma.02G299300

Glyma.02G299300


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.02G299300
Cluster HCCA clusters: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
A4A49_29596 No alias putative pectinesterase 29 0.04 Orthogroups_2024-Update
At2g21610 No alias Pectinesterase 11 [Source:UniProtKB/TrEMBL;Acc:A0A1P8AZ45] 0.02 Orthogroups_2024-Update
Bradi2g11470 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.I00335.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Brara.J01617.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os03g19610 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
Sobic.008G131300.1 No alias pectin methylesterase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 60 353
No external refs found!