Sopen09g011980


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g011980
Cluster HCCA clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G106200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.009G166500 No alias Function unknown 0.03 Orthogroups_2024-Update
Pp1s249_4V6 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g062480 No alias No description available 0.03 Orthogroups_2024-Update
Solyc05g021080 No alias No description available 0.03 Orthogroups_2024-Update
Solyc05g050260 No alias No description available 0.04 Orthogroups_2024-Update
Solyc06g011420 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g059360 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g016050 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen01g017420 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen03g010550 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update
Sopen05g018370 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g010750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g004660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g004240 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g025020 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013103 RVT_2 842 1085
IPR001584 Integrase_cat-core 482 594
IPR025724 GAG-pre-integrase_dom 401 465
IPR001878 Znf_CCHC 230 247
No external refs found!