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  5. Glyma.03G050300

Glyma.03G050300


Description : Ribosomal protein S4 (RPS4A) family protein


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.03G050300
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
148442 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
A4A49_10798 No alias 40s ribosomal protein s4 0.03 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.02 Orthogroups_2024-Update
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.B01147.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre06.g308250 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
GRMZM2G035017 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 Orthogroups_2024-Update
GRMZM2G125271 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
MA_127596g0010 No alias (at5g58420 : 436.0) Ribosomal protein S4 (RPS4A) family... 0.03 Orthogroups_2024-Update
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.03 Orthogroups_2024-Update
Potri.013G011000 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Pp1s2_16V6 No alias 40s ribosomal protein s4 0.04 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.04 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.04 Orthogroups_2024-Update
Seita.3G036600.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.3G268400.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g070350 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.04 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.02 Orthogroups_2024-Update
Sopen02g019420 No alias Ribosomal family S4e 0.05 Orthogroups_2024-Update
Sopen02g019430 No alias Ribosomal family S4e 0.05 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.03 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 47 90
IPR013843 Ribosomal_S4e_N 3 39
IPR032277 40S_S4_C 212 258
IPR013845 Ribosomal_S4e_central_region 95 169
IPR005824 KOW 177 210
No external refs found!