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  5. Glyma.03G108100

Glyma.03G108100


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.03G108100
Cluster HCCA clusters: Cluster_492

Target Alias Description ECC score Gene Family Method Actions
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
GRMZM2G105229 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G016360.4 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU7Hr1G011310.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_58210g0010 No alias (at1g07590 : 517.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.002G139400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G117800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G203100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g078330 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Sopen01g031100 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g035710 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g031410 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g002280 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 397 424
IPR002885 Pentatricopeptide_repeat 361 385
IPR002885 Pentatricopeptide_repeat 184 212
IPR002885 Pentatricopeptide_repeat 240 298
No external refs found!